Bayesian Modeling: Estimate a Computer Model and Make Uncertain Predictions

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Documentation for package ‘RBaM’ version 1.1.1

• DESCRIPTION file.
• Package NEWS.

Help Pages

BaM	Run BaM
blocDiag	Bloc-diagonal matrix constructor
dataset	dataset object constructor.
densityPlot	densityPlot
downloadBaM	BaM downloader
getAwPfromBathy	Bathymetry interpreter
getCatalogue	BaM catalogue
getInitPar	Get initial values
getNames	Get object names
getParNames	Get parameter names
llfunk_iid_Gaussian	Log-likelihood function: iid Gaussian
llfunk_iLinear_Gaussian	Log-likelihood function: independent-linear Gaussian
logLikelihood_BaM	BaM log-likelihood
logPosterior_BaM	BaM log-posterior
logPosterior_BaM_wrapped	BaM log-posterior
logPrior_Flat	Log-prior function: improper flat prior
mcmcCooking	mcmcCooking constructor.
mcmcOptions	mcmcOptions object constructor.
mcmcSummary	mcmcSummary constructor.
MCMC_AM	Adaptive Metropolis sampler
MCMC_OAAT	Adaptive One-At-A-Time Metropolis sampler
MeyrasGaugings	Meyras Gaugings
model	model object constructor.
parameter	parameter object constructor.
parameter_VAR	Varying parameter object constructor.
prediction	prediction object constructor.
readMCMC	MCMC Reader
remnantErrorModel	remnantErrorModel object constructor.
residualOptions	residualOptions constructor.
runModel	Run Model
runOptions	runOptions constructor.
SauzeGaugings	Sauze Gaugings
setInitPar	Set initial values
setPathToBaM	Path to BaM
SPD_estimate	Estimation of a BaRatin-SPD model
SPD_getVARproperties	Properties of VAR parameters
toString.dataset	dataset to string
toString.mcmcCooking	mcmcCooking to string
toString.mcmcOptions	mcmcOptions to string
toString.mcmcSummary	mcmcSummary to string
toString.model	model to string
toString.parameter	parameter to string
toString.parameter_VAR	parameter_VAR to string
toString.prediction	prediction to string
toString.remnantErrorModel	remnantErrorModel to string
toString.residualOptions	residualOptions to string
toString.runOptions	runOptions to string
tracePlot	MCMC reporting
twoPopulations	Evolution of two populations
violinPlot	violinPlot
writePredInputs	Write prediction inputs
xtraModelInfo	xtraModelInfo constructor.