* using log directory 'd:/Rcompile/CRANpkg/local/4.5/delimtools.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'delimtools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'delimtools' version '0.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Packages suggested but not available for checking: 'bGMYC', 'splits'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'delimtools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'bGMYC'
Unknown package 'splits' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [2s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [19s] ERROR
Running examples in 'delimtools-Ex.R' failed
The error most likely occurred in:

> ### Name: get_delim_cols
> ### Title: Extract Labels and Colors from Species Delimitation Partitions
> ### Aliases: get_delim_cols
> 
> ### ** Examples
> 
> 
> # plot using autoplot
> p <- delim_autoplot(geophagus_delims, geophagus_beast)
Warning: ⚠ Argument `tbl_labs` not provided. Using tiplabels instead.
Warning in fortify(data, ...) : Arguments in `...` must be used.
✖ Problematic arguments:
• as.Date = as.Date
• yscale_mapping = yscale_mapping
• hang = hang
• color = "grey50"
• size = 1
ℹ Did you misspell an argument name?
Warning: ⚠ Argument `delim_order` not provided. Using default order from
`geophagus_delims`.
Warning: ⚠ Argument `col_vec` not provided. Customizing one using `delim_brewer()`.
ℹ Please use `delimtools::delim_brewer()` to create even better colour
  palettes!
Warning: ⚠ `n_match` was not found. Using `n_match= 4` instead.
> 
> # view 
> p
> 
> # get haplotypes
> hap_tbl <- haplotype_tbl(geophagus)
Warning: ⚠ You have missing data "('N','-' '?')" or ambiguity inside your sequence, i.e.
not padding the ends, and this may have unintended consequences later, as they
have now been removed!
ℹ The names of the samples are bellow.
GU701784.1, GU701785.1
> 
> # extract colors for consensus
> get_delim_cols(p, delimname= "consensus", hap_tbl= hap_tbl)
Error in `pluck_raw()`:
! Index 1 must be a string, not a number.
Backtrace:
    ▆
 1. └─delimtools::get_delim_cols(p, delimname = "consensus", hap_tbl = hap_tbl)
 2.   ├─rlang::is_empty(purrr::pluck(p_build, 1, 2))
 3.   └─purrr::pluck(p_build, 1, 2)
 4.     └─purrr:::pluck_raw(.x, list2(...), .default = .default)
 5.       └─purrr:::stop_bad_element_type(...)
 6.         └─cli::cli_abort(...)
 7.           └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s] OK
* checking PDF version of manual ... [23s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 1 ERROR, 1 NOTE